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science/openbabel

Chemistry file translation program

Flavor Version Run OSVersion Arch License Restricted Status
2.3.2 350 1.0 amd64 gpl2 0 fail

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Events

Machine Type Time Message
Constellation10 info 2019-01-01 21:32:15.441146 Test Started
Constellation10 fail 2019-01-01 21:32:34.333128 make build returned non-zero: 1
Constellation10 fail 2019-01-01 21:32:34.474758 Test complete.

Log

===>  Building for openbabel-2.3.2
[1/500] Building CXX object src/CMakeFiles/openbabel.dir/alias.o
FAILED: src/CMakeFiles/openbabel.dir/alias.o 
/usr/bin/c++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -Iinclude -I/magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/data -I/magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/include -I/usr/local/include/eigen3 -O2 -pipe -fno-strict-aliasing -O2 -pipe -fno-strict-aliasing -fPIC   -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.2\"" -MD -MT src/CMakeFiles/openbabel.dir/alias.o -MF src/CMakeFiles/openbabel.dir/alias.o.d -o src/CMakeFiles/openbabel.dir/alias.o -c /magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/src/alias.cpp
In file included from /magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/src/alias.cpp:17:
In file included from /magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:19:
/magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/include/openbabel/shared_ptr.h:27:14: error: no member named 'tr1' in namespace 'std'
  using std::tr1::shared_ptr;
        ~~~~~^
In file included from /magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/src/alias.cpp:17:
/magus/work/usr/mports/science/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:118:47: error: no template named 'shared_ptr'; did you mean 'std::shared_ptr'?
  typedef std::vector< std::pair > > SmartsTable;
                                              ^~~~~~~~~~
                                              std::shared_ptr
/usr/include/c++/v1/memory:3760:29: note: 'std::shared_ptr' declared here
class _LIBCPP_TYPE_VIS_ONLY shared_ptr
                            ^
2 errors generated.
[2/500] Building CXX object src/CMakeFiles/openbabel.dir/atom.o
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/mports/science/openbabel

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