[Midnightbsd-cvs] mports: math/R: Update R to 2.6.1.
laffer1 at midnightbsd.org
laffer1 at midnightbsd.org
Mon Apr 14 14:08:52 EDT 2008
Log Message:
-----------
Update R to 2.6.1. This builds on my system which is amazing. (it's been since fake came out)
Modified Files:
--------------
mports/math/R:
Makefile (r1.2 -> r1.3)
distinfo (r1.1 -> r1.2)
pkg-plist (r1.1 -> r1.2)
-------------- next part --------------
Index: pkg-plist
===================================================================
RCS file: /home/cvs/mports/math/R/pkg-plist,v
retrieving revision 1.1
retrieving revision 1.2
diff -L math/R/pkg-plist -L math/R/pkg-plist -u -r1.1 -r1.2
--- math/R/pkg-plist
+++ math/R/pkg-plist
@@ -1,4 +1,5 @@
bin/R
+bin/Rscript
lib/R/COPYING
lib/R/NEWS
lib/R/SVN-REVISION
@@ -14,6 +15,7 @@
lib/R/bin/Rdconv
lib/R/bin/Rdiff
lib/R/bin/Rprof
+lib/R/bin/Rscript
lib/R/bin/SHLIB
lib/R/bin/Sd2Rd
lib/R/bin/Stangle
@@ -27,7 +29,6 @@
lib/R/bin/libtool
lib/R/bin/mkinstalldirs
lib/R/bin/pager
-lib/R/bin/texi2dvi
lib/R/etc/Makeconf
lib/R/etc/Renviron
lib/R/etc/ldpaths
@@ -62,6 +63,8 @@
lib/R/include/R_ext/eventloop.h
lib/R/include/R_ext/libextern.h
lib/R/include/R_ext/rlocale.h
+lib/R/include/R_ext/stats_package.h
+lib/R/include/R_ext/stats_stubs.h
lib/R/include/Rconfig.h
lib/R/include/Rdefines.h
lib/R/include/Rdevices.h
@@ -77,6 +80,7 @@
lib/R/library/KernSmooth/CONTENTS
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
+lib/R/library/KernSmooth/LICENCE
lib/R/library/KernSmooth/Meta/Rd.rds
lib/R/library/KernSmooth/Meta/hsearch.rds
lib/R/library/KernSmooth/Meta/nsInfo.rds
@@ -718,6 +722,7 @@
lib/R/library/base/R-ex/Cstack_info.R
lib/R/library/base/R-ex/DateTimeClasses.R
lib/R/library/base/R-ex/Dates.R
+lib/R/library/base/R-ex/Encoding.R
lib/R/library/base/R-ex/Extract.R
lib/R/library/base/R-ex/Extract.data.frame.R
lib/R/library/base/R-ex/Extract.factor.R
@@ -729,6 +734,7 @@
lib/R/library/base/R-ex/Memory.R
lib/R/library/base/R-ex/NA.R
lib/R/library/base/R-ex/NULL.R
+lib/R/library/base/R-ex/NumericConstants.R
lib/R/library/base/R-ex/Ops.Date.R
lib/R/library/base/R-ex/Paren.R
lib/R/library/base/R-ex/Platform.R
@@ -739,9 +745,15 @@
lib/R/library/base/R-ex/Round.R
lib/R/library/base/R-ex/Special.R
lib/R/library/base/R-ex/Startup.R
+lib/R/library/base/R-ex/Sys.getenv.R
+lib/R/library/base/R-ex/Sys.getpid.R
+lib/R/library/base/R-ex/Sys.glob.R
lib/R/library/base/R-ex/Sys.info.R
+lib/R/library/base/R-ex/Sys.localeconv.R
+lib/R/library/base/R-ex/Sys.setenv.R
lib/R/library/base/R-ex/Sys.sleep.R
lib/R/library/base/R-ex/Sys.time.R
+lib/R/library/base/R-ex/Sys.which.R
lib/R/library/base/R-ex/Version.R
lib/R/library/base/R-ex/abbreviate.R
lib/R/library/base/R-ex/agrep.R
@@ -770,6 +782,7 @@
lib/R/library/base/R-ex/by.R
lib/R/library/base/R-ex/c.R
lib/R/library/base/R-ex/call.R
+lib/R/library/base/R-ex/callCC.R
lib/R/library/base/R-ex/capabilities.R
lib/R/library/base/R-ex/cat.R
lib/R/library/base/R-ex/cbind.R
@@ -790,7 +803,6 @@
lib/R/library/base/R-ex/conflicts.R
lib/R/library/base/R-ex/connections.R
lib/R/library/base/R-ex/converters.R
-lib/R/library/base/R-ex/count.fields.R
lib/R/library/base/R-ex/crossprod.R
lib/R/library/base/R-ex/cumsum.R
lib/R/library/base/R-ex/cut.POSIXt.R
@@ -839,6 +851,7 @@
lib/R/library/base/R-ex/formatDL.R
lib/R/library/base/R-ex/formatc.R
lib/R/library/base/R-ex/function.R
+lib/R/library/base/R-ex/funprog.R
lib/R/library/base/R-ex/gc.R
lib/R/library/base/R-ex/gc.time.R
lib/R/library/base/R-ex/get.R
@@ -846,8 +859,6 @@
lib/R/library/base/R-ex/getDLLRegisteredRoutines.R
lib/R/library/base/R-ex/getLoadedDLLs.R
lib/R/library/base/R-ex/getNativeSymbolInfo.R
-lib/R/library/base/R-ex/getenv.R
-lib/R/library/base/R-ex/getpid.R
lib/R/library/base/R-ex/gettext.R
lib/R/library/base/R-ex/getwd.R
lib/R/library/base/R-ex/gl.R
@@ -882,7 +893,6 @@
lib/R/library/base/R-ex/list.R
lib/R/library/base/R-ex/list.files.R
lib/R/library/base/R-ex/load.R
-lib/R/library/base/R-ex/localeconv.R
lib/R/library/base/R-ex/locales.R
lib/R/library/base/R-ex/lower.tri.R
lib/R/library/base/R-ex/ls.R
@@ -917,12 +927,12 @@
lib/R/library/base/R-ex/ns-dblcolon.R
lib/R/library/base/R-ex/ns-topenv.R
lib/R/library/base/R-ex/numeric.R
+lib/R/library/base/R-ex/numeric_version.R
lib/R/library/base/R-ex/octmode.R
lib/R/library/base/R-ex/on.exit.R
lib/R/library/base/R-ex/options.R
lib/R/library/base/R-ex/order.R
lib/R/library/base/R-ex/outer.R
-lib/R/library/base/R-ex/package_version.R
lib/R/library/base/R-ex/parse.R
lib/R/library/base/R-ex/paste.R
lib/R/library/base/R-ex/path.expand.R
@@ -937,7 +947,6 @@
lib/R/library/base/R-ex/prod.R
lib/R/library/base/R-ex/prop.table.R
lib/R/library/base/R-ex/pushBack.R
-lib/R/library/base/R-ex/putenv.R
lib/R/library/base/R-ex/qr.R
lib/R/library/base/R-ex/qraux.R
lib/R/library/base/R-ex/quit.R
@@ -981,7 +990,7 @@
lib/R/library/base/R-ex/source.R
lib/R/library/base/R-ex/split.R
lib/R/library/base/R-ex/sprintf.R
-lib/R/library/base/R-ex/stack.R
+lib/R/library/base/R-ex/srcfile.R
lib/R/library/base/R-ex/stop.R
lib/R/library/base/R-ex/stopifnot.R
lib/R/library/base/R-ex/strptime.R
@@ -997,6 +1006,7 @@
lib/R/library/base/R-ex/sweep.R
lib/R/library/base/R-ex/switch.R
lib/R/library/base/R-ex/sys.parent.R
+lib/R/library/base/R-ex/sys.source.R
lib/R/library/base/R-ex/system.R
lib/R/library/base/R-ex/system.file.R
lib/R/library/base/R-ex/system.time.R
@@ -1012,6 +1022,7 @@
lib/R/library/base/R-ex/toString.R
lib/R/library/base/R-ex/trace.R
lib/R/library/base/R-ex/traceback.R
+lib/R/library/base/R-ex/tracemem.R
lib/R/library/base/R-ex/transform.R
lib/R/library/base/R-ex/try.R
lib/R/library/base/R-ex/typeof.R
@@ -1027,7 +1038,6 @@
lib/R/library/base/R-ex/which.min.R
lib/R/library/base/R-ex/with.R
lib/R/library/base/R-ex/write.R
-lib/R/library/base/R-ex/write.table.R
lib/R/library/base/R-ex/zMachine.R
lib/R/library/base/R-ex/zScript.R
lib/R/library/base/R-ex/zpackages.R
@@ -1051,6 +1061,7 @@
lib/R/library/base/help/Dates
lib/R/library/base/help/Defunct
lib/R/library/base/help/Deprecated
+lib/R/library/base/help/Encoding
lib/R/library/base/help/Extract
lib/R/library/base/help/Extract.data.frame
lib/R/library/base/help/Extract.factor
@@ -1076,15 +1087,22 @@
lib/R/library/base/help/Random-user
lib/R/library/base/help/RdUtils
lib/R/library/base/help/Recall
+lib/R/library/base/help/Reserved
lib/R/library/base/help/Rhome
lib/R/library/base/help/Round
lib/R/library/base/help/Signals
lib/R/library/base/help/Special
lib/R/library/base/help/Startup
lib/R/library/base/help/Syntax
+lib/R/library/base/help/Sys.getenv
+lib/R/library/base/help/Sys.getpid
+lib/R/library/base/help/Sys.glob
lib/R/library/base/help/Sys.info
+lib/R/library/base/help/Sys.localeconv
+lib/R/library/base/help/Sys.setenv
lib/R/library/base/help/Sys.sleep
lib/R/library/base/help/Sys.time
+lib/R/library/base/help/Sys.which
lib/R/library/base/help/Trig
lib/R/library/base/help/UseMethod
lib/R/library/base/help/Version
@@ -1123,6 +1141,7 @@
lib/R/library/base/help/by
lib/R/library/base/help/c
lib/R/library/base/help/call
+lib/R/library/base/help/callCC
lib/R/library/base/help/capabilities
lib/R/library/base/help/cat
lib/R/library/base/help/cbind
@@ -1145,7 +1164,6 @@
lib/R/library/base/help/contributors
lib/R/library/base/help/converters
lib/R/library/base/help/copyright
-lib/R/library/base/help/count.fields
lib/R/library/base/help/crossprod
lib/R/library/base/help/cumsum
lib/R/library/base/help/cut
@@ -1200,6 +1218,7 @@
lib/R/library/base/help/formatDL
lib/R/library/base/help/formatc
lib/R/library/base/help/function
+lib/R/library/base/help/funprog
lib/R/library/base/help/gc
lib/R/library/base/help/gc.time
lib/R/library/base/help/gctorture
@@ -1208,8 +1227,6 @@
lib/R/library/base/help/getDLLRegisteredRoutines
lib/R/library/base/help/getLoadedDLLs
lib/R/library/base/help/getNativeSymbolInfo
-lib/R/library/base/help/getenv
-lib/R/library/base/help/getpid
lib/R/library/base/help/gettext
lib/R/library/base/help/getwd
lib/R/library/base/help/gl
@@ -1249,7 +1266,6 @@
lib/R/library/base/help/list
lib/R/library/base/help/list.files
lib/R/library/base/help/load
-lib/R/library/base/help/localeconv
lib/R/library/base/help/locales
lib/R/library/base/help/logical
lib/R/library/base/help/lower.tri
@@ -1290,12 +1306,12 @@
lib/R/library/base/help/ns-reflect
lib/R/library/base/help/ns-topenv
lib/R/library/base/help/numeric
+lib/R/library/base/help/numeric_version
lib/R/library/base/help/octmode
lib/R/library/base/help/on.exit
lib/R/library/base/help/options
lib/R/library/base/help/order
lib/R/library/base/help/outer
-lib/R/library/base/help/package_version
lib/R/library/base/help/parse
lib/R/library/base/help/paste
lib/R/library/base/help/path.expand
@@ -1311,7 +1327,6 @@
lib/R/library/base/help/prod
lib/R/library/base/help/prop.table
lib/R/library/base/help/pushBack
-lib/R/library/base/help/putenv
lib/R/library/base/help/qr
lib/R/library/base/help/qraux
lib/R/library/base/help/quit
@@ -1320,7 +1335,6 @@
lib/R/library/base/help/rapply
lib/R/library/base/help/raw
lib/R/library/base/help/rawConversion
-lib/R/library/base/help/read.table
lib/R/library/base/help/readBin
lib/R/library/base/help/readChar
lib/R/library/base/help/readLines
@@ -1362,7 +1376,7 @@
lib/R/library/base/help/source
lib/R/library/base/help/split
lib/R/library/base/help/sprintf
-lib/R/library/base/help/stack
+lib/R/library/base/help/srcfile
lib/R/library/base/help/standardGeneric
lib/R/library/base/help/stop
lib/R/library/base/help/stopifnot
@@ -1397,9 +1411,9 @@
lib/R/library/base/help/toString
lib/R/library/base/help/trace
lib/R/library/base/help/traceback
+lib/R/library/base/help/tracemem
lib/R/library/base/help/transform
lib/R/library/base/help/try
-lib/R/library/base/help/type.convert
lib/R/library/base/help/typeof
lib/R/library/base/help/unique
lib/R/library/base/help/unlink
@@ -1415,12 +1429,10 @@
lib/R/library/base/help/which.min
lib/R/library/base/help/with
lib/R/library/base/help/write
-lib/R/library/base/help/write.table
lib/R/library/base/help/writeLines
lib/R/library/base/help/zMachine
lib/R/library/base/help/zMethods
lib/R/library/base/help/zScript
-lib/R/library/base/help/zip.file.extract
lib/R/library/base/help/zpackages
lib/R/library/base/help/zutils
lib/R/library/base/html/00Index.html
@@ -1436,6 +1448,7 @@
lib/R/library/base/html/Dates.html
lib/R/library/base/html/Defunct.html
lib/R/library/base/html/Deprecated.html
+lib/R/library/base/html/Encoding.html
lib/R/library/base/html/Extract.data.frame.html
lib/R/library/base/html/Extract.factor.html
lib/R/library/base/html/Extract.html
@@ -1461,15 +1474,22 @@
lib/R/library/base/html/Random.html
lib/R/library/base/html/RdUtils.html
lib/R/library/base/html/Recall.html
+lib/R/library/base/html/Reserved.html
lib/R/library/base/html/Rhome.html
lib/R/library/base/html/Round.html
lib/R/library/base/html/Signals.html
lib/R/library/base/html/Special.html
lib/R/library/base/html/Startup.html
lib/R/library/base/html/Syntax.html
+lib/R/library/base/html/Sys.getenv.html
+lib/R/library/base/html/Sys.getpid.html
+lib/R/library/base/html/Sys.glob.html
lib/R/library/base/html/Sys.info.html
+lib/R/library/base/html/Sys.localeconv.html
+lib/R/library/base/html/Sys.setenv.html
lib/R/library/base/html/Sys.sleep.html
lib/R/library/base/html/Sys.time.html
+lib/R/library/base/html/Sys.which.html
lib/R/library/base/html/Trig.html
lib/R/library/base/html/UseMethod.html
lib/R/library/base/html/Version.html
@@ -1508,6 +1528,7 @@
lib/R/library/base/html/by.html
lib/R/library/base/html/c.html
lib/R/library/base/html/call.html
+lib/R/library/base/html/callCC.html
lib/R/library/base/html/capabilities.html
lib/R/library/base/html/cat.html
lib/R/library/base/html/cbind.html
@@ -1530,7 +1551,6 @@
lib/R/library/base/html/contributors.html
lib/R/library/base/html/converters.html
lib/R/library/base/html/copyright.html
-lib/R/library/base/html/count.fields.html
lib/R/library/base/html/crossprod.html
lib/R/library/base/html/cumsum.html
lib/R/library/base/html/cut.POSIXt.html
@@ -1585,6 +1605,7 @@
lib/R/library/base/html/formatDL.html
lib/R/library/base/html/formatc.html
lib/R/library/base/html/function.html
+lib/R/library/base/html/funprog.html
lib/R/library/base/html/gc.html
lib/R/library/base/html/gc.time.html
lib/R/library/base/html/gctorture.html
@@ -1593,8 +1614,6 @@
lib/R/library/base/html/getDLLRegisteredRoutines.html
lib/R/library/base/html/getLoadedDLLs.html
lib/R/library/base/html/getNativeSymbolInfo.html
-lib/R/library/base/html/getenv.html
-lib/R/library/base/html/getpid.html
lib/R/library/base/html/gettext.html
lib/R/library/base/html/getwd.html
lib/R/library/base/html/gl.html
@@ -1634,7 +1653,6 @@
lib/R/library/base/html/list.files.html
lib/R/library/base/html/list.html
lib/R/library/base/html/load.html
-lib/R/library/base/html/localeconv.html
lib/R/library/base/html/locales.html
lib/R/library/base/html/logical.html
lib/R/library/base/html/lower.tri.html
@@ -1675,12 +1693,12 @@
lib/R/library/base/html/ns-reflect.html
lib/R/library/base/html/ns-topenv.html
lib/R/library/base/html/numeric.html
+lib/R/library/base/html/numeric_version.html
lib/R/library/base/html/octmode.html
lib/R/library/base/html/on.exit.html
lib/R/library/base/html/options.html
lib/R/library/base/html/order.html
lib/R/library/base/html/outer.html
-lib/R/library/base/html/package_version.html
lib/R/library/base/html/parse.html
lib/R/library/base/html/paste.html
lib/R/library/base/html/path.expand.html
@@ -1696,7 +1714,6 @@
lib/R/library/base/html/prod.html
lib/R/library/base/html/prop.table.html
lib/R/library/base/html/pushBack.html
-lib/R/library/base/html/putenv.html
lib/R/library/base/html/qr.html
lib/R/library/base/html/qraux.html
lib/R/library/base/html/quit.html
@@ -1705,7 +1722,6 @@
lib/R/library/base/html/rapply.html
lib/R/library/base/html/raw.html
lib/R/library/base/html/rawConversion.html
-lib/R/library/base/html/read.table.html
lib/R/library/base/html/readBin.html
lib/R/library/base/html/readChar.html
lib/R/library/base/html/readLines.html
@@ -1747,7 +1763,7 @@
lib/R/library/base/html/source.html
lib/R/library/base/html/split.html
lib/R/library/base/html/sprintf.html
-lib/R/library/base/html/stack.html
+lib/R/library/base/html/srcfile.html
lib/R/library/base/html/standardGeneric.html
lib/R/library/base/html/stop.html
lib/R/library/base/html/stopifnot.html
@@ -1782,9 +1798,9 @@
lib/R/library/base/html/toString.html
lib/R/library/base/html/trace.html
lib/R/library/base/html/traceback.html
+lib/R/library/base/html/tracemem.html
lib/R/library/base/html/transform.html
lib/R/library/base/html/try.html
-lib/R/library/base/html/type.convert.html
lib/R/library/base/html/typeof.html
lib/R/library/base/html/unique.html
lib/R/library/base/html/unlink.html
@@ -1800,12 +1816,10 @@
lib/R/library/base/html/which.min.html
lib/R/library/base/html/with.html
lib/R/library/base/html/write.html
-lib/R/library/base/html/write.table.html
lib/R/library/base/html/writeLines.html
lib/R/library/base/html/zMachine.html
lib/R/library/base/html/zMethods.html
lib/R/library/base/html/zScript.html
-lib/R/library/base/html/zip.file.extract.html
lib/R/library/base/html/zpackages.html
lib/R/library/base/html/zutils.html
lib/R/library/base/latex/Arithmetic.tex
@@ -1820,6 +1834,7 @@
lib/R/library/base/latex/Dates.tex
lib/R/library/base/latex/Defunct.tex
lib/R/library/base/latex/Deprecated.tex
+lib/R/library/base/latex/Encoding.tex
lib/R/library/base/latex/Extract.data.frame.tex
lib/R/library/base/latex/Extract.factor.tex
lib/R/library/base/latex/Extract.tex
@@ -1845,15 +1860,22 @@
lib/R/library/base/latex/Random.tex
lib/R/library/base/latex/RdUtils.tex
lib/R/library/base/latex/Recall.tex
+lib/R/library/base/latex/Reserved.tex
lib/R/library/base/latex/Rhome.tex
lib/R/library/base/latex/Round.tex
lib/R/library/base/latex/Signals.tex
lib/R/library/base/latex/Special.tex
lib/R/library/base/latex/Startup.tex
lib/R/library/base/latex/Syntax.tex
+lib/R/library/base/latex/Sys.getenv.tex
+lib/R/library/base/latex/Sys.getpid.tex
+lib/R/library/base/latex/Sys.glob.tex
lib/R/library/base/latex/Sys.info.tex
+lib/R/library/base/latex/Sys.localeconv.tex
+lib/R/library/base/latex/Sys.setenv.tex
lib/R/library/base/latex/Sys.sleep.tex
lib/R/library/base/latex/Sys.time.tex
+lib/R/library/base/latex/Sys.which.tex
lib/R/library/base/latex/Trig.tex
lib/R/library/base/latex/UseMethod.tex
lib/R/library/base/latex/Version.tex
@@ -1892,6 +1914,7 @@
lib/R/library/base/latex/by.tex
lib/R/library/base/latex/c.tex
lib/R/library/base/latex/call.tex
+lib/R/library/base/latex/callCC.tex
lib/R/library/base/latex/capabilities.tex
lib/R/library/base/latex/cat.tex
lib/R/library/base/latex/cbind.tex
@@ -1914,7 +1937,6 @@
lib/R/library/base/latex/contributors.tex
lib/R/library/base/latex/converters.tex
lib/R/library/base/latex/copyright.tex
-lib/R/library/base/latex/count.fields.tex
lib/R/library/base/latex/crossprod.tex
lib/R/library/base/latex/cumsum.tex
lib/R/library/base/latex/cut.POSIXt.tex
@@ -1969,6 +1991,7 @@
lib/R/library/base/latex/formatDL.tex
lib/R/library/base/latex/formatc.tex
lib/R/library/base/latex/function.tex
+lib/R/library/base/latex/funprog.tex
lib/R/library/base/latex/gc.tex
lib/R/library/base/latex/gc.time.tex
lib/R/library/base/latex/gctorture.tex
@@ -1977,8 +2000,6 @@
lib/R/library/base/latex/getDLLRegisteredRoutines.tex
lib/R/library/base/latex/getLoadedDLLs.tex
lib/R/library/base/latex/getNativeSymbolInfo.tex
-lib/R/library/base/latex/getenv.tex
-lib/R/library/base/latex/getpid.tex
lib/R/library/base/latex/gettext.tex
lib/R/library/base/latex/getwd.tex
lib/R/library/base/latex/gl.tex
@@ -2018,7 +2039,6 @@
lib/R/library/base/latex/list.files.tex
lib/R/library/base/latex/list.tex
lib/R/library/base/latex/load.tex
-lib/R/library/base/latex/localeconv.tex
lib/R/library/base/latex/locales.tex
lib/R/library/base/latex/logical.tex
lib/R/library/base/latex/lower.tri.tex
@@ -2059,12 +2079,12 @@
lib/R/library/base/latex/ns-reflect.tex
lib/R/library/base/latex/ns-topenv.tex
lib/R/library/base/latex/numeric.tex
+lib/R/library/base/latex/numeric_version.tex
lib/R/library/base/latex/octmode.tex
lib/R/library/base/latex/on.exit.tex
lib/R/library/base/latex/options.tex
lib/R/library/base/latex/order.tex
lib/R/library/base/latex/outer.tex
-lib/R/library/base/latex/package_version.tex
lib/R/library/base/latex/parse.tex
lib/R/library/base/latex/paste.tex
lib/R/library/base/latex/path.expand.tex
@@ -2080,7 +2100,6 @@
lib/R/library/base/latex/prod.tex
lib/R/library/base/latex/prop.table.tex
lib/R/library/base/latex/pushBack.tex
-lib/R/library/base/latex/putenv.tex
lib/R/library/base/latex/qr.tex
lib/R/library/base/latex/qraux.tex
lib/R/library/base/latex/quit.tex
@@ -2089,7 +2108,6 @@
lib/R/library/base/latex/rapply.tex
lib/R/library/base/latex/raw.tex
lib/R/library/base/latex/rawConversion.tex
-lib/R/library/base/latex/read.table.tex
lib/R/library/base/latex/readBin.tex
lib/R/library/base/latex/readChar.tex
lib/R/library/base/latex/readLines.tex
@@ -2131,7 +2149,7 @@
lib/R/library/base/latex/source.tex
lib/R/library/base/latex/split.tex
lib/R/library/base/latex/sprintf.tex
-lib/R/library/base/latex/stack.tex
+lib/R/library/base/latex/srcfile.tex
lib/R/library/base/latex/standardGeneric.tex
lib/R/library/base/latex/stop.tex
lib/R/library/base/latex/stopifnot.tex
@@ -2166,9 +2184,9 @@
lib/R/library/base/latex/toString.tex
lib/R/library/base/latex/trace.tex
lib/R/library/base/latex/traceback.tex
+lib/R/library/base/latex/tracemem.tex
lib/R/library/base/latex/transform.tex
lib/R/library/base/latex/try.tex
-lib/R/library/base/latex/type.convert.tex
lib/R/library/base/latex/typeof.tex
lib/R/library/base/latex/unique.tex
lib/R/library/base/latex/unlink.tex
@@ -2183,13 +2201,11 @@
lib/R/library/base/latex/which.min.tex
lib/R/library/base/latex/which.tex
lib/R/library/base/latex/with.tex
-lib/R/library/base/latex/write.table.tex
lib/R/library/base/latex/write.tex
lib/R/library/base/latex/writeLines.tex
lib/R/library/base/latex/zMachine.tex
lib/R/library/base/latex/zMethods.tex
lib/R/library/base/latex/zScript.tex
-lib/R/library/base/latex/zip.file.extract.tex
lib/R/library/base/latex/zpackages.tex
lib/R/library/base/latex/zutils.tex
lib/R/library/base/man/base.Rd.gz
@@ -2511,6 +2527,7 @@
lib/R/library/boot/man/boot.Rd.gz
lib/R/library/boot/po/en at quot/LC_MESSAGES/R-boot.mo
lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo
+lib/R/library/boot/po/ru/LC_MESSAGES/R-boot.mo
lib/R/library/class/CITATION
lib/R/library/class/CONTENTS
lib/R/library/class/DESCRIPTION
@@ -2537,6 +2554,8 @@
lib/R/library/class/R-ex/olvq1.R
lib/R/library/class/R-ex/reduce.nn.R
lib/R/library/class/R/class
+lib/R/library/class/R/class.rdb
+lib/R/library/class/R/class.rdx
lib/R/library/class/help/AnIndex
lib/R/library/class/help/SOM
lib/R/library/class/help/batchSOM
@@ -2609,7 +2628,6 @@
lib/R/library/cluster/R-ex/coef.hclust.R
lib/R/library/cluster/R-ex/daisy.R
lib/R/library/cluster/R-ex/diana.R
-lib/R/library/cluster/R-ex/diana.object.R
lib/R/library/cluster/R-ex/ellipsoidhull.R
lib/R/library/cluster/R-ex/fanny.R
lib/R/library/cluster/R-ex/flower.R
@@ -2653,7 +2671,6 @@
lib/R/library/cluster/help/coef.hclust
lib/R/library/cluster/help/daisy
lib/R/library/cluster/help/diana
-lib/R/library/cluster/help/diana.object
lib/R/library/cluster/help/dissimilarity.object
lib/R/library/cluster/help/ellipsoidhull
lib/R/library/cluster/help/fanny
@@ -2709,7 +2726,6 @@
lib/R/library/cluster/html/coef.hclust.html
lib/R/library/cluster/html/daisy.html
lib/R/library/cluster/html/diana.html
-lib/R/library/cluster/html/diana.object.html
lib/R/library/cluster/html/dissimilarity.object.html
lib/R/library/cluster/html/ellipsoidhull.html
lib/R/library/cluster/html/fanny.html
@@ -2763,7 +2779,6 @@
lib/R/library/cluster/latex/cluster-internal.tex
lib/R/library/cluster/latex/coef.hclust.tex
lib/R/library/cluster/latex/daisy.tex
-lib/R/library/cluster/latex/diana.object.tex
lib/R/library/cluster/latex/diana.tex
lib/R/library/cluster/latex/dissimilarity.object.tex
lib/R/library/cluster/latex/ellipsoidhull.tex
@@ -2806,6 +2821,35 @@
lib/R/library/cluster/latex/xclara.tex
lib/R/library/cluster/libs/cluster.so
lib/R/library/cluster/man/cluster.Rd.gz
+lib/R/library/codetools/CONTENTS
+lib/R/library/codetools/DESCRIPTION
+lib/R/library/codetools/INDEX
+lib/R/library/codetools/Meta/Rd.rds
+lib/R/library/codetools/Meta/hsearch.rds
+lib/R/library/codetools/Meta/nsInfo.rds
+lib/R/library/codetools/Meta/package.rds
+lib/R/library/codetools/NAMESPACE
+lib/R/library/codetools/R-ex/checkUsage.R
+lib/R/library/codetools/R-ex/findGlobals.R
+lib/R/library/codetools/R-ex/showTree.R
+lib/R/library/codetools/R/codetools
+lib/R/library/codetools/R/codetools.rdb
+lib/R/library/codetools/R/codetools.rdx
+lib/R/library/codetools/help/AnIndex
+lib/R/library/codetools/help/checkUsage
+lib/R/library/codetools/help/codetools
+lib/R/library/codetools/help/findGlobals
+lib/R/library/codetools/help/showTree
+lib/R/library/codetools/html/00Index.html
+lib/R/library/codetools/html/checkUsage.html
+lib/R/library/codetools/html/codetools.html
+lib/R/library/codetools/html/findGlobals.html
+lib/R/library/codetools/html/showTree.html
+lib/R/library/codetools/latex/checkUsage.tex
+lib/R/library/codetools/latex/codetools.tex
+lib/R/library/codetools/latex/findGlobals.tex
+lib/R/library/codetools/latex/showTree.tex
+lib/R/library/codetools/man/codetools.Rd.gz
lib/R/library/datasets/CONTENTS
lib/R/library/datasets/DESCRIPTION
lib/R/library/datasets/INDEX
@@ -2854,6 +2898,7 @@
lib/R/library/datasets/R-ex/cars.R
lib/R/library/datasets/R-ex/chickwts.R
lib/R/library/datasets/R-ex/co2.R
+lib/R/library/datasets/R-ex/crimtab.R
lib/R/library/datasets/R-ex/discoveries.R
lib/R/library/datasets/R-ex/esoph.R
lib/R/library/datasets/R-ex/euro.R
@@ -2935,6 +2980,7 @@
lib/R/library/datasets/help/cars
lib/R/library/datasets/help/chickwts
lib/R/library/datasets/help/co2
+lib/R/library/datasets/help/crimtab
lib/R/library/datasets/help/datasets-package
lib/R/library/datasets/help/discoveries
lib/R/library/datasets/help/esoph
@@ -3020,6 +3066,7 @@
lib/R/library/datasets/html/cars.html
lib/R/library/datasets/html/chickwts.html
lib/R/library/datasets/html/co2.html
+lib/R/library/datasets/html/crimtab.html
lib/R/library/datasets/html/datasets-package.html
lib/R/library/datasets/html/discoveries.html
lib/R/library/datasets/html/esoph.html
@@ -3104,6 +3151,7 @@
lib/R/library/datasets/latex/cars.tex
lib/R/library/datasets/latex/chickwts.tex
lib/R/library/datasets/latex/co2.tex
+lib/R/library/datasets/latex/crimtab.tex
lib/R/library/datasets/latex/datasets-package.tex
lib/R/library/datasets/latex/discoveries.tex
lib/R/library/datasets/latex/esoph.tex
@@ -3163,6 +3211,7 @@
lib/R/library/foreign/R-ex/read.ssd.R
lib/R/library/foreign/R-ex/read.systat.R
lib/R/library/foreign/R-ex/read.xport.R
+lib/R/library/foreign/R-ex/write.arff.R
lib/R/library/foreign/R-ex/write.dbf.R
lib/R/library/foreign/R-ex/write.dta.R
lib/R/library/foreign/R-ex/write.foreign.R
@@ -3175,6 +3224,7 @@
lib/R/library/foreign/help/AnIndex
lib/R/library/foreign/help/lookup.xport
lib/R/library/foreign/help/read.S
+lib/R/library/foreign/help/read.arff
lib/R/library/foreign/help/read.dbf
lib/R/library/foreign/help/read.dta
lib/R/library/foreign/help/read.epiinfo
@@ -3184,12 +3234,14 @@
lib/R/library/foreign/help/read.ssd
lib/R/library/foreign/help/read.systat
lib/R/library/foreign/help/read.xport
+lib/R/library/foreign/help/write.arff
lib/R/library/foreign/help/write.dbf
lib/R/library/foreign/help/write.dta
lib/R/library/foreign/help/write.foreign
lib/R/library/foreign/html/00Index.html
lib/R/library/foreign/html/lookup.xport.html
lib/R/library/foreign/html/read.S.html
+lib/R/library/foreign/html/read.arff.html
lib/R/library/foreign/html/read.dbf.html
lib/R/library/foreign/html/read.dta.html
lib/R/library/foreign/html/read.epiinfo.html
@@ -3199,11 +3251,13 @@
lib/R/library/foreign/html/read.ssd.html
lib/R/library/foreign/html/read.systat.html
lib/R/library/foreign/html/read.xport.html
+lib/R/library/foreign/html/write.arff.html
lib/R/library/foreign/html/write.dbf.html
lib/R/library/foreign/html/write.dta.html
lib/R/library/foreign/html/write.foreign.html
lib/R/library/foreign/latex/lookup.xport.tex
lib/R/library/foreign/latex/read.S.tex
+lib/R/library/foreign/latex/read.arff.tex
lib/R/library/foreign/latex/read.dbf.tex
lib/R/library/foreign/latex/read.dta.tex
lib/R/library/foreign/latex/read.epiinfo.tex
@@ -3213,6 +3267,7 @@
lib/R/library/foreign/latex/read.ssd.tex
lib/R/library/foreign/latex/read.systat.tex
lib/R/library/foreign/latex/read.xport.tex
+lib/R/library/foreign/latex/write.arff.tex
lib/R/library/foreign/latex/write.dbf.tex
lib/R/library/foreign/latex/write.dta.tex
lib/R/library/foreign/latex/write.foreign.tex
@@ -3254,6 +3309,7 @@
lib/R/library/grDevices/R-ex/hsv.R
lib/R/library/grDevices/R-ex/make.rgb.R
lib/R/library/grDevices/R-ex/n2mfrow.R
+lib/R/library/grDevices/R-ex/nclass.R
lib/R/library/grDevices/R-ex/palette.R
lib/R/library/grDevices/R-ex/palettes.R
lib/R/library/grDevices/R-ex/pdf.R
@@ -3270,6 +3326,7 @@
lib/R/library/grDevices/R-ex/trans3d.R
lib/R/library/grDevices/R-ex/x11Fonts.R
lib/R/library/grDevices/R-ex/xy.coords.R
+lib/R/library/grDevices/R-ex/xyTable.R
lib/R/library/grDevices/R-ex/xyz.coords.R
lib/R/library/grDevices/R/grDevices
lib/R/library/grDevices/R/grDevices.rdb
@@ -3386,6 +3443,7 @@
lib/R/library/grDevices/help/Hershey
lib/R/library/grDevices/help/Japanese
lib/R/library/grDevices/help/Type1Font
+lib/R/library/grDevices/help/as.graphicsAnnot
lib/R/library/grDevices/help/boxplot.stats
lib/R/library/grDevices/help/check.options
lib/R/library/grDevices/help/chull
@@ -3431,12 +3489,14 @@
lib/R/library/grDevices/help/x11Fonts
lib/R/library/grDevices/help/xfig
lib/R/library/grDevices/help/xy.coords
+lib/R/library/grDevices/help/xyTable
lib/R/library/grDevices/help/xyz.coords
lib/R/library/grDevices/html/00Index.html
lib/R/library/grDevices/html/Devices.html
lib/R/library/grDevices/html/Hershey.html
lib/R/library/grDevices/html/Japanese.html
lib/R/library/grDevices/html/Type1Font.html
+lib/R/library/grDevices/html/as.graphicsAnnot.html
lib/R/library/grDevices/html/boxplot.stats.html
lib/R/library/grDevices/html/check.options.html
lib/R/library/grDevices/html/chull.html
@@ -3482,11 +3542,13 @@
lib/R/library/grDevices/html/x11Fonts.html
lib/R/library/grDevices/html/xfig.html
lib/R/library/grDevices/html/xy.coords.html
+lib/R/library/grDevices/html/xyTable.html
lib/R/library/grDevices/html/xyz.coords.html
lib/R/library/grDevices/latex/Devices.tex
lib/R/library/grDevices/latex/Hershey.tex
lib/R/library/grDevices/latex/Japanese.tex
lib/R/library/grDevices/latex/Type1Font.tex
+lib/R/library/grDevices/latex/as.graphicsAnnot.tex
lib/R/library/grDevices/latex/boxplot.stats.tex
lib/R/library/grDevices/latex/check.options.tex
lib/R/library/grDevices/latex/chull.tex
@@ -3532,23 +3594,27 @@
lib/R/library/grDevices/latex/x11Fonts.tex
lib/R/library/grDevices/latex/xfig.tex
lib/R/library/grDevices/latex/xy.coords.tex
+lib/R/library/grDevices/latex/xyTable.tex
lib/R/library/grDevices/latex/xyz.coords.tex
lib/R/library/grDevices/libs/grDevices.so
lib/R/library/grDevices/man/grDevices.Rd.gz
+lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/en at quot/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/en at quot/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/en_GB/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/en_GB/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/fr/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/fr/LC_MESSAGES/grDevices.mo
-lib/R/library/grDevices/po/grDevices-zh_CN/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/it/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/it/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/ja/LC_MESSAGES/R-grDevices.mo
+lib/R/library/grDevices/po/ja/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/ko/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/ko/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/ru/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/ru/LC_MESSAGES/grDevices.mo
+lib/R/library/grDevices/po/zh_CN/LC_MESSAGES/R-grDevices.mo
+lib/R/library/grDevices/po/zh_CN/LC_MESSAGES/grDevices.mo
lib/R/library/graphics/CONTENTS
lib/R/library/graphics/DESCRIPTION
lib/R/library/graphics/INDEX
@@ -3578,6 +3644,7 @@
lib/R/library/graphics/R-ex/grid.R
lib/R/library/graphics/R-ex/hist.POSIXt.R
lib/R/library/graphics/R-ex/hist.R
+lib/R/library/graphics/R-ex/identify.R
lib/R/library/graphics/R-ex/image.R
lib/R/library/graphics/R-ex/layout.R
lib/R/library/graphics/R-ex/legend.R
@@ -3616,6 +3683,7 @@
lib/R/library/graphics/R-ex/text.R
lib/R/library/graphics/R-ex/title.R
lib/R/library/graphics/R-ex/units.R
+lib/R/library/graphics/R-ex/xspline.R
lib/R/library/graphics/R/graphics
lib/R/library/graphics/R/graphics.rdb
lib/R/library/graphics/R/graphics.rdx
@@ -3689,6 +3757,7 @@
lib/R/library/graphics/help/text
lib/R/library/graphics/help/title
lib/R/library/graphics/help/units
+lib/R/library/graphics/help/xspline
lib/R/library/graphics/help/zAxis
lib/R/library/graphics/html/00Index.html
lib/R/library/graphics/html/abline.html
@@ -3754,6 +3823,7 @@
lib/R/library/graphics/html/text.html
lib/R/library/graphics/html/title.html
lib/R/library/graphics/html/units.html
+lib/R/library/graphics/html/xspline.html
lib/R/library/graphics/html/zAxis.html
lib/R/library/graphics/latex/abline.tex
lib/R/library/graphics/latex/arrows.tex
@@ -3818,14 +3888,17 @@
lib/R/library/graphics/latex/text.tex
lib/R/library/graphics/latex/title.tex
lib/R/library/graphics/latex/units.tex
+lib/R/library/graphics/latex/xspline.tex
lib/R/library/graphics/latex/zAxis.tex
lib/R/library/graphics/man/graphics.Rd.gz
+lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/en at quot/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/fr/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/it/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/ja/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/ko/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/ru/LC_MESSAGES/R-graphics.mo
+lib/R/library/graphics/po/zh_CN/LC_MESSAGES/R-graphics.mo
lib/R/library/grid/CONTENTS
lib/R/library/grid/DESCRIPTION
lib/R/library/grid/INDEX
@@ -3856,6 +3929,7 @@
lib/R/library/grid/R-ex/grid.layout.R
lib/R/library/grid/R-ex/grid.lines.R
lib/R/library/grid/R-ex/grid.locator.R
+lib/R/library/grid/R-ex/grid.ls.R
lib/R/library/grid/R-ex/grid.move.to.R
lib/R/library/grid/R-ex/grid.plot.and.legend.R
lib/R/library/grid/R-ex/grid.polygon.R
@@ -3937,6 +4011,7 @@
lib/R/library/grid/help/grid.layout
lib/R/library/grid/help/grid.lines
lib/R/library/grid/help/grid.locator
+lib/R/library/grid/help/grid.ls
lib/R/library/grid/help/grid.move.to
lib/R/library/grid/help/grid.newpage
lib/R/library/grid/help/grid.pack
@@ -4010,6 +4085,7 @@
lib/R/library/grid/html/grid.layout.html
lib/R/library/grid/html/grid.lines.html
lib/R/library/grid/html/grid.locator.html
+lib/R/library/grid/html/grid.ls.html
lib/R/library/grid/html/grid.move.to.html
lib/R/library/grid/html/grid.newpage.html
lib/R/library/grid/html/grid.pack.html
@@ -4082,6 +4158,7 @@
lib/R/library/grid/latex/grid.layout.tex
lib/R/library/grid/latex/grid.lines.tex
lib/R/library/grid/latex/grid.locator.tex
+lib/R/library/grid/latex/grid.ls.tex
lib/R/library/grid/latex/grid.move.to.tex
lib/R/library/grid/latex/grid.newpage.tex
lib/R/library/grid/latex/grid.pack.tex
@@ -4123,6 +4200,7 @@
lib/R/library/grid/latex/xDetails.tex
lib/R/library/grid/libs/grid.so
lib/R/library/grid/man/grid.Rd.gz
+lib/R/library/grid/po/de/LC_MESSAGES/R-grid.mo
lib/R/library/grid/po/en at quot/LC_MESSAGES/R-grid.mo
lib/R/library/grid/po/en at quot/LC_MESSAGES/grid.mo
lib/R/library/grid/po/fr/LC_MESSAGES/R-grid.mo
@@ -4135,6 +4213,8 @@
lib/R/library/grid/po/pt_BR/LC_MESSAGES/grid.mo
lib/R/library/grid/po/ru/LC_MESSAGES/R-grid.mo
lib/R/library/grid/po/ru/LC_MESSAGES/grid.mo
+lib/R/library/grid/po/zh_CN/LC_MESSAGES/R-grid.mo
+lib/R/library/grid/po/zh_CN/LC_MESSAGES/grid.mo
lib/R/library/lattice/CONTENTS
lib/R/library/lattice/COPYING
lib/R/library/lattice/Changes
@@ -4149,6 +4229,7 @@
lib/R/library/lattice/NAMESPACE
lib/R/library/lattice/R-ex/Lattice.R
lib/R/library/lattice/R-ex/axis.default.R
+lib/R/library/lattice/R-ex/banking.R
lib/R/library/lattice/R-ex/barchart.table.R
lib/R/library/lattice/R-ex/barley.R
lib/R/library/lattice/R-ex/cloud.R
@@ -4157,16 +4238,20 @@
lib/R/library/lattice/R-ex/histogram.R
lib/R/library/lattice/R-ex/interaction.R
lib/R/library/lattice/R-ex/lattice.options.R
+lib/R/library/lattice/R-ex/level.colors.R
lib/R/library/lattice/R-ex/levelplot.R
lib/R/library/lattice/R-ex/make.groups.R
lib/R/library/lattice/R-ex/melanoma.R
+lib/R/library/lattice/R-ex/packet.panel.default.R
lib/R/library/lattice/R-ex/panel.bwplot.R
lib/R/library/lattice/R-ex/panel.violin.R
+lib/R/library/lattice/R-ex/panel.xyplot.R
lib/R/library/lattice/R-ex/print.trellis.R
lib/R/library/lattice/R-ex/qq.R
lib/R/library/lattice/R-ex/qqmath.R
lib/R/library/lattice/R-ex/rfs.R
lib/R/library/lattice/R-ex/shingles.R
+lib/R/library/lattice/R-ex/simpleTheme.R
lib/R/library/lattice/R-ex/singer.R
lib/R/library/lattice/R-ex/splom.R
lib/R/library/lattice/R-ex/strip.default.R
@@ -4199,6 +4284,7 @@
lib/R/library/lattice/help/interaction
lib/R/library/lattice/help/lattice.options
lib/R/library/lattice/help/latticeParseFormula
+lib/R/library/lattice/help/level.colors
lib/R/library/lattice/help/levelplot
lib/R/library/lattice/help/llines
lib/R/library/lattice/help/lset
@@ -4224,6 +4310,7 @@
lib/R/library/lattice/help/panel.superpose
lib/R/library/lattice/help/panel.violin
lib/R/library/lattice/help/panel.xyplot
+lib/R/library/lattice/help/prepanel.default
lib/R/library/lattice/help/prepanel.functions
lib/R/library/lattice/help/print.trellis
lib/R/library/lattice/help/qq
@@ -4231,6 +4318,7 @@
lib/R/library/lattice/help/rfs
lib/R/library/lattice/help/shingles
lib/R/library/lattice/help/simpleKey
+lib/R/library/lattice/help/simpleTheme
lib/R/library/lattice/help/singer
lib/R/library/lattice/help/splom
lib/R/library/lattice/help/strip.default
@@ -4257,6 +4345,7 @@
lib/R/library/lattice/html/interaction.html
lib/R/library/lattice/html/lattice.options.html
lib/R/library/lattice/html/latticeParseFormula.html
+lib/R/library/lattice/html/level.colors.html
lib/R/library/lattice/html/levelplot.html
lib/R/library/lattice/html/llines.html
lib/R/library/lattice/html/lset.html
@@ -4282,6 +4371,7 @@
lib/R/library/lattice/html/panel.superpose.html
lib/R/library/lattice/html/panel.violin.html
lib/R/library/lattice/html/panel.xyplot.html
+lib/R/library/lattice/html/prepanel.default.html
lib/R/library/lattice/html/prepanel.functions.html
lib/R/library/lattice/html/print.trellis.html
lib/R/library/lattice/html/qq.html
@@ -4289,6 +4379,7 @@
lib/R/library/lattice/html/rfs.html
lib/R/library/lattice/html/shingles.html
lib/R/library/lattice/html/simpleKey.html
+lib/R/library/lattice/html/simpleTheme.html
lib/R/library/lattice/html/singer.html
lib/R/library/lattice/html/splom.html
lib/R/library/lattice/html/strip.default.html
@@ -4314,6 +4405,7 @@
lib/R/library/lattice/latex/interaction.tex
lib/R/library/lattice/latex/lattice.options.tex
lib/R/library/lattice/latex/latticeParseFormula.tex
+lib/R/library/lattice/latex/level.colors.tex
lib/R/library/lattice/latex/levelplot.tex
lib/R/library/lattice/latex/llines.tex
lib/R/library/lattice/latex/lset.tex
@@ -4339,6 +4431,7 @@
lib/R/library/lattice/latex/panel.superpose.tex
lib/R/library/lattice/latex/panel.violin.tex
lib/R/library/lattice/latex/panel.xyplot.tex
+lib/R/library/lattice/latex/prepanel.default.tex
lib/R/library/lattice/latex/prepanel.functions.tex
lib/R/library/lattice/latex/print.trellis.tex
lib/R/library/lattice/latex/qq.tex
@@ -4346,6 +4439,7 @@
lib/R/library/lattice/latex/rfs.tex
lib/R/library/lattice/latex/shingles.tex
lib/R/library/lattice/latex/simpleKey.tex
+lib/R/library/lattice/latex/simpleTheme.tex
lib/R/library/lattice/latex/singer.tex
lib/R/library/lattice/latex/splom.tex
lib/R/library/lattice/latex/strip.default.tex
@@ -4370,6 +4464,7 @@
lib/R/library/methods/R-ex/NextMethod.R
lib/R/library/methods/R-ex/RMethodUtils.R
lib/R/library/methods/R-ex/S4groupGeneric.R
+lib/R/library/methods/R-ex/StructureClasses.R
lib/R/library/methods/R-ex/as.R
lib/R/library/methods/R-ex/canCoerce.R
lib/R/library/methods/R-ex/cbind2.R
@@ -4377,8 +4472,10 @@
lib/R/library/methods/R-ex/getMethod.R
lib/R/library/methods/R-ex/getPackageName.R
lib/R/library/methods/R-ex/hasArg.R
+lib/R/library/methods/R-ex/implicitGeneric.R
lib/R/library/methods/R-ex/is.R
lib/R/library/methods/R-ex/isSealedMethod.R
+lib/R/library/methods/R-ex/method.skeleton.R
lib/R/library/methods/R-ex/new.R
lib/R/library/methods/R-ex/promptClass.R
lib/R/library/methods/R-ex/representation.R
@@ -4429,10 +4526,12 @@
lib/R/library/methods/help/getMethod
lib/R/library/methods/help/getPackageName
lib/R/library/methods/help/hasArg
+lib/R/library/methods/help/implicitGeneric
lib/R/library/methods/help/initialize-methods
lib/R/library/methods/help/is
lib/R/library/methods/help/isSealedMethod
lib/R/library/methods/help/languageEl
+lib/R/library/methods/help/method.skeleton
lib/R/library/methods/help/methodUtilities
lib/R/library/methods/help/methods-package
lib/R/library/methods/help/new
@@ -4488,10 +4587,12 @@
lib/R/library/methods/html/getMethod.html
lib/R/library/methods/html/getPackageName.html
lib/R/library/methods/html/hasArg.html
+lib/R/library/methods/html/implicitGeneric.html
lib/R/library/methods/html/initialize-methods.html
lib/R/library/methods/html/is.html
lib/R/library/methods/html/isSealedMethod.html
lib/R/library/methods/html/languageEl.html
+lib/R/library/methods/html/method.skeleton.html
lib/R/library/methods/html/methodUtilities.html
lib/R/library/methods/html/methods-package.html
lib/R/library/methods/html/new.html
@@ -4546,10 +4647,12 @@
lib/R/library/methods/latex/getMethod.tex
lib/R/library/methods/latex/getPackageName.tex
lib/R/library/methods/latex/hasArg.tex
+lib/R/library/methods/latex/implicitGeneric.tex
lib/R/library/methods/latex/initialize-methods.tex
lib/R/library/methods/latex/is.tex
lib/R/library/methods/latex/isSealedMethod.tex
lib/R/library/methods/latex/languageEl.tex
+lib/R/library/methods/latex/method.skeleton.tex
lib/R/library/methods/latex/methodUtilities.tex
lib/R/library/methods/latex/methods-package.tex
lib/R/library/methods/latex/new.tex
@@ -4577,10 +4680,15 @@
lib/R/library/methods/po/en at quot/LC_MESSAGES/methods.mo
lib/R/library/methods/po/fr/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/fr/LC_MESSAGES/methods.mo
+lib/R/library/methods/po/ja/LC_MESSAGES/R-methods.mo
+lib/R/library/methods/po/ja/LC_MESSAGES/methods.mo
lib/R/library/methods/po/ko/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/pt_BR/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/pt_BR/LC_MESSAGES/methods.mo
+lib/R/library/methods/po/ru/LC_MESSAGES/R-methods.mo
+lib/R/library/methods/po/ru/LC_MESSAGES/methods.mo
lib/R/library/methods/po/zh_CN/LC_MESSAGES/R-methods.mo
+lib/R/library/methods/po/zh_CN/LC_MESSAGES/methods.mo
lib/R/library/mgcv/CITATION
lib/R/library/mgcv/CONTENTS
lib/R/library/mgcv/DESCRIPTION
@@ -4607,6 +4715,7 @@
lib/R/library/mgcv/R-ex/magic.R
lib/R/library/mgcv/R-ex/mgcv-package.R
lib/R/library/mgcv/R-ex/mgcv.R
+lib/R/library/mgcv/R-ex/model.matrix.gam.R
lib/R/library/mgcv/R-ex/mono.con.R
lib/R/library/mgcv/R-ex/mroot.R
lib/R/library/mgcv/R-ex/new.name.R
@@ -4669,6 +4778,7 @@
lib/R/library/mgcv/help/mgcv
lib/R/library/mgcv/help/mgcv-package
lib/R/library/mgcv/help/mgcv.control
+lib/R/library/mgcv/help/model.matrix.gam
lib/R/library/mgcv/help/mono.con
lib/R/library/mgcv/help/mroot
lib/R/library/mgcv/help/new.name
@@ -4731,6 +4841,7 @@
lib/R/library/mgcv/html/mgcv-package.html
lib/R/library/mgcv/html/mgcv.control.html
lib/R/library/mgcv/html/mgcv.html
+lib/R/library/mgcv/html/model.matrix.gam.html
lib/R/library/mgcv/html/mono.con.html
lib/R/library/mgcv/html/mroot.html
lib/R/library/mgcv/html/new.name.html
@@ -4792,6 +4903,7 @@
lib/R/library/mgcv/latex/mgcv-package.tex
lib/R/library/mgcv/latex/mgcv.control.tex
lib/R/library/mgcv/latex/mgcv.tex
+lib/R/library/mgcv/latex/model.matrix.gam.tex
lib/R/library/mgcv/latex/mono.con.tex
lib/R/library/mgcv/latex/mroot.tex
lib/R/library/mgcv/latex/new.name.tex
@@ -4997,7 +5109,6 @@
lib/R/library/nlme/R-ex/pdMatrix.reStruct.R
lib/R/library/nlme/R-ex/pdNatural.R
lib/R/library/nlme/R-ex/pdSymm.R
-lib/R/library/nlme/R-ex/phenoModel.R
lib/R/library/nlme/R-ex/plot.ACF.R
lib/R/library/nlme/R-ex/plot.Variogram.R
lib/R/library/nlme/R-ex/plot.augPred.R
@@ -5021,7 +5132,6 @@
lib/R/library/nlme/R-ex/print.varFunc.R
lib/R/library/nlme/R-ex/qqnorm.gls.R
lib/R/library/nlme/R-ex/qqnorm.lme.R
-lib/R/library/nlme/R-ex/quinModel.R
lib/R/library/nlme/R-ex/random.effects.R
lib/R/library/nlme/R-ex/ranef.lmList.R
lib/R/library/nlme/R-ex/ranef.lme.R
@@ -5977,6 +6087,25 @@
lib/R/library/nnet/man/nnet.Rd.gz
lib/R/library/nnet/po/en at quot/LC_MESSAGES/R-nnet.mo
lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo
+lib/R/library/rcompgen/CONTENTS
+lib/R/library/rcompgen/COPYING
+lib/R/library/rcompgen/DESCRIPTION
+lib/R/library/rcompgen/INDEX
+lib/R/library/rcompgen/Meta/Rd.rds
+lib/R/library/rcompgen/Meta/hsearch.rds
+lib/R/library/rcompgen/Meta/nsInfo.rds
+lib/R/library/rcompgen/Meta/package.rds
+lib/R/library/rcompgen/NAMESPACE
+lib/R/library/rcompgen/R/rcompgen
+lib/R/library/rcompgen/R/rcompgen.rdb
+lib/R/library/rcompgen/R/rcompgen.rdx
+lib/R/library/rcompgen/examples/altesscomp.el
+lib/R/library/rcompgen/help/AnIndex
+lib/R/library/rcompgen/help/rcompgen
+lib/R/library/rcompgen/html/00Index.html
+lib/R/library/rcompgen/html/rcompgen.html
+lib/R/library/rcompgen/latex/rcompgen.tex
+lib/R/library/rcompgen/man/rcompgen.Rd.gz
lib/R/library/rpart/CONTENTS
lib/R/library/rpart/DESCRIPTION
lib/R/library/rpart/INDEX
@@ -6130,6 +6259,8 @@
lib/R/library/spatial/R-ex/trmat.R
lib/R/library/spatial/R-ex/variogram.R
lib/R/library/spatial/R/spatial
+lib/R/library/spatial/R/spatial.rdb
+lib/R/library/spatial/R/spatial.rdx
lib/R/library/spatial/help/AnIndex
lib/R/library/spatial/help/Kaver
lib/R/library/spatial/help/Kenvl
@@ -6305,6 +6436,8 @@
lib/R/library/splines/po/pt_BR/LC_MESSAGES/splines.mo
lib/R/library/splines/po/ru/LC_MESSAGES/R-splines.mo
lib/R/library/splines/po/ru/LC_MESSAGES/splines.mo
+lib/R/library/splines/po/zh_CN/LC_MESSAGES/R-splines.mo
+lib/R/library/splines/po/zh_CN/LC_MESSAGES/splines.mo
lib/R/library/stats/CONTENTS
lib/R/library/stats/COPYRIGHTS.modreg
lib/R/library/stats/DESCRIPTION
@@ -7521,6 +7654,7 @@
lib/R/library/stats/po/ru/LC_MESSAGES/R-stats.mo
lib/R/library/stats/po/ru/LC_MESSAGES/stats.mo
lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo
+lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo
lib/R/library/stats4/CONTENTS
lib/R/library/stats4/DESCRIPTION
lib/R/library/stats4/INDEX
@@ -7532,8 +7666,9 @@
lib/R/library/stats4/R-ex/BIC.R
lib/R/library/stats4/R-ex/mle.R
lib/R/library/stats4/R-ex/update-methods.R
-lib/R/library/stats4/R/all.rda
lib/R/library/stats4/R/stats4
+lib/R/library/stats4/R/stats4.rdb
+lib/R/library/stats4/R/stats4.rdx
lib/R/library/stats4/help/AIC-methods
lib/R/library/stats4/help/AnIndex
lib/R/library/stats4/help/BIC
@@ -7592,6 +7727,7 @@
lib/R/library/stats4/po/ko/LC_MESSAGES/R-stats4.mo
lib/R/library/stats4/po/pt_BR/LC_MESSAGES/R-stats4.mo
lib/R/library/stats4/po/ru/LC_MESSAGES/R-stats4.mo
+lib/R/library/stats4/po/zh_CN/LC_MESSAGES/R-stats4.mo
lib/R/library/survival/CONTENTS
lib/R/library/survival/COPYING
lib/R/library/survival/DESCRIPTION
@@ -7638,10 +7774,10 @@
lib/R/library/survival/R-ex/survSplit.R
lib/R/library/survival/R-ex/survdiff.R
lib/R/library/survival/R-ex/survexp.R
+lib/R/library/survival/R-ex/survexp.us.R
lib/R/library/survival/R-ex/survfit.R
lib/R/library/survival/R-ex/survobrien.R
lib/R/library/survival/R-ex/survreg.R
-lib/R/library/survival/R-ex/survreg.control.R
lib/R/library/survival/R-ex/survreg.distributions.R
lib/R/library/survival/R-ex/survreg.old.R
lib/R/library/survival/R-ex/tcut.R
@@ -7911,12 +8047,18 @@
%%TCLTK%%lib/R/library/tcltk/libs/tcltk.so
lib/R/library/tcltk/man/tcltk.Rd.gz
lib/R/library/tcltk/po/en at quot/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/en at quot/LC_MESSAGES/tcltk.mo
lib/R/library/tcltk/po/fr/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/fr/LC_MESSAGES/tcltk.mo
lib/R/library/tcltk/po/it/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/ja/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/ja/LC_MESSAGES/tcltk.mo
lib/R/library/tcltk/po/ko/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/pt_BR/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/ru/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/ru/LC_MESSAGES/tcltk.mo
+lib/R/library/tcltk/po/zh_CN/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/zh_CN/LC_MESSAGES/tcltk.mo
lib/R/library/tools/CONTENTS
lib/R/library/tools/DESCRIPTION
lib/R/library/tools/INDEX
@@ -8033,12 +8175,15 @@
lib/R/library/tools/po/fr/LC_MESSAGES/tools.mo
lib/R/library/tools/po/it/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/it/LC_MESSAGES/tools.mo
+lib/R/library/tools/po/ja/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/ja/LC_MESSAGES/tools.mo
lib/R/library/tools/po/ko/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/ko/LC_MESSAGES/tools.mo
lib/R/library/tools/po/pt_BR/LC_MESSAGES/tools.mo
lib/R/library/tools/po/ru/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/ru/LC_MESSAGES/tools.mo
+lib/R/library/tools/po/zh_CN/LC_MESSAGES/R-tools.mo
+lib/R/library/tools/po/zh_CN/LC_MESSAGES/tools.mo
lib/R/library/utils/CONTENTS
lib/R/library/utils/DESCRIPTION
lib/R/library/utils/INDEX
@@ -8047,9 +8192,11 @@
lib/R/library/utils/Meta/nsInfo.rds
lib/R/library/utils/Meta/package.rds
lib/R/library/utils/NAMESPACE
+lib/R/library/utils/R-ex/RShowDoc.R
lib/R/library/utils/R-ex/RSiteSearch.R
lib/R/library/utils/R-ex/Rprof.R
lib/R/library/utils/R-ex/Rprofmem.R
+lib/R/library/utils/R-ex/Rscript.R
lib/R/library/utils/R-ex/SHLIB.R
lib/R/library/utils/R-ex/Sweave.R
lib/R/library/utils/R-ex/SweaveSyntConv.R
@@ -8063,6 +8210,7 @@
lib/R/library/utils/R-ex/citation.R
lib/R/library/utils/R-ex/combn.R
lib/R/library/utils/R-ex/compareVersion.R
+lib/R/library/utils/R-ex/count.fields.R
lib/R/library/utils/R-ex/data.R
lib/R/library/utils/R-ex/dataentry.R
lib/R/library/utils/R-ex/debugger.R
@@ -8071,7 +8219,9 @@
lib/R/library/utils/R-ex/edit.data.frame.R
lib/R/library/utils/R-ex/example.R
lib/R/library/utils/R-ex/file.edit.R
+lib/R/library/utils/R-ex/filetest.R
lib/R/library/utils/R-ex/fix.R
+lib/R/library/utils/R-ex/format.R
lib/R/library/utils/R-ex/getAnywhere.R
lib/R/library/utils/R-ex/getFromNamespace.R
lib/R/library/utils/R-ex/getS3method.R
@@ -8103,15 +8253,19 @@
lib/R/library/utils/R-ex/read.socket.R
lib/R/library/utils/R-ex/readNEWS.R
lib/R/library/utils/R-ex/recover.R
+lib/R/library/utils/R-ex/relist.R
+lib/R/library/utils/R-ex/roman.R
lib/R/library/utils/R-ex/savehistory.R
lib/R/library/utils/R-ex/select.list.R
lib/R/library/utils/R-ex/sessionInfo.R
+lib/R/library/utils/R-ex/stack.R
lib/R/library/utils/R-ex/str.R
lib/R/library/utils/R-ex/summaryRprof.R
-lib/R/library/utils/R-ex/tracemem.R
lib/R/library/utils/R-ex/update.packages.R
lib/R/library/utils/R-ex/url.show.R
lib/R/library/utils/R-ex/vignette.R
+lib/R/library/utils/R-ex/withVisible.R
+lib/R/library/utils/R-ex/write.table.R
lib/R/library/utils/R/utils
lib/R/library/utils/R/utils.rdb
lib/R/library/utils/R/utils.rdx
@@ -8124,9 +8278,11 @@
lib/R/library/utils/help/PkgUtils
lib/R/library/utils/help/REMOVE
lib/R/library/utils/help/RHOME
+lib/R/library/utils/help/RShowDoc
lib/R/library/utils/help/RSiteSearch
lib/R/library/utils/help/Rprof
lib/R/library/utils/help/Rprofmem
+lib/R/library/utils/help/Rscript
lib/R/library/utils/help/Rtangle
lib/R/library/utils/help/RweaveLatex
lib/R/library/utils/help/SHLIB
@@ -8134,6 +8290,7 @@
lib/R/library/utils/help/SweaveSyntConv
lib/R/library/utils/help/SweaveUtils
lib/R/library/utils/help/URLencode
+lib/R/library/utils/help/View
lib/R/library/utils/help/alarm
lib/R/library/utils/help/apropos
lib/R/library/utils/help/browseEnv
@@ -8146,6 +8303,7 @@
lib/R/library/utils/help/close.socket
lib/R/library/utils/help/combn
lib/R/library/utils/help/compareVersion
+lib/R/library/utils/help/count.fields
lib/R/library/utils/help/data
lib/R/library/utils/help/dataentry
lib/R/library/utils/help/debugger
@@ -8155,8 +8313,10 @@
lib/R/library/utils/help/edit.data.frame
lib/R/library/utils/help/example
lib/R/library/utils/help/file.edit
+lib/R/library/utils/help/filetest
lib/R/library/utils/help/fix
lib/R/library/utils/help/flush.console
+lib/R/library/utils/help/format
lib/R/library/utils/help/getAnywhere
lib/R/library/utils/help/getFromNamespace
lib/R/library/utils/help/getS3method
@@ -8191,23 +8351,30 @@
lib/R/library/utils/help/read.fortran
lib/R/library/utils/help/read.fwf
lib/R/library/utils/help/read.socket
+lib/R/library/utils/help/read.table
lib/R/library/utils/help/readNEWS
lib/R/library/utils/help/recover
+lib/R/library/utils/help/relist
lib/R/library/utils/help/remove.packages
+lib/R/library/utils/help/roman
lib/R/library/utils/help/savehistory
lib/R/library/utils/help/select.list
lib/R/library/utils/help/sessionInfo
lib/R/library/utils/help/setRepositories
+lib/R/library/utils/help/stack
lib/R/library/utils/help/str
lib/R/library/utils/help/summaryRprof
lib/R/library/utils/help/toLatex
-lib/R/library/utils/help/tracemem
+lib/R/library/utils/help/type.convert
lib/R/library/utils/help/update.packages
lib/R/library/utils/help/url.show
lib/R/library/utils/help/utils-defunct
lib/R/library/utils/help/utils-deprecated
lib/R/library/utils/help/utils-package
lib/R/library/utils/help/vignette
+lib/R/library/utils/help/withVisible
+lib/R/library/utils/help/write.table
+lib/R/library/utils/help/zip.file.extract
lib/R/library/utils/html/00Index.html
lib/R/library/utils/html/BATCH.html
lib/R/library/utils/html/COMPILE.html
@@ -8216,9 +8383,11 @@
lib/R/library/utils/html/PkgUtils.html
lib/R/library/utils/html/REMOVE.html
lib/R/library/utils/html/RHOME.html
+lib/R/library/utils/html/RShowDoc.html
lib/R/library/utils/html/RSiteSearch.html
lib/R/library/utils/html/Rprof.html
lib/R/library/utils/html/Rprofmem.html
+lib/R/library/utils/html/Rscript.html
lib/R/library/utils/html/Rtangle.html
lib/R/library/utils/html/RweaveLatex.html
lib/R/library/utils/html/SHLIB.html
@@ -8226,6 +8395,7 @@
lib/R/library/utils/html/SweaveSyntConv.html
lib/R/library/utils/html/SweaveUtils.html
lib/R/library/utils/html/URLencode.html
+lib/R/library/utils/html/View.html
lib/R/library/utils/html/alarm.html
lib/R/library/utils/html/apropos.html
lib/R/library/utils/html/browseEnv.html
@@ -8238,6 +8408,7 @@
lib/R/library/utils/html/close.socket.html
lib/R/library/utils/html/combn.html
lib/R/library/utils/html/compareVersion.html
+lib/R/library/utils/html/count.fields.html
lib/R/library/utils/html/data.html
lib/R/library/utils/html/dataentry.html
lib/R/library/utils/html/debugger.html
@@ -8247,8 +8418,10 @@
lib/R/library/utils/html/edit.html
lib/R/library/utils/html/example.html
lib/R/library/utils/html/file.edit.html
+lib/R/library/utils/html/filetest.html
lib/R/library/utils/html/fix.html
lib/R/library/utils/html/flush.console.html
+lib/R/library/utils/html/format.html
lib/R/library/utils/html/getAnywhere.html
lib/R/library/utils/html/getFromNamespace.html
lib/R/library/utils/html/getS3method.html
@@ -8283,23 +8456,30 @@
lib/R/library/utils/html/read.fortran.html
lib/R/library/utils/html/read.fwf.html
lib/R/library/utils/html/read.socket.html
+lib/R/library/utils/html/read.table.html
lib/R/library/utils/html/readNEWS.html
lib/R/library/utils/html/recover.html
+lib/R/library/utils/html/relist.html
lib/R/library/utils/html/remove.packages.html
+lib/R/library/utils/html/roman.html
lib/R/library/utils/html/savehistory.html
lib/R/library/utils/html/select.list.html
lib/R/library/utils/html/sessionInfo.html
lib/R/library/utils/html/setRepositories.html
+lib/R/library/utils/html/stack.html
lib/R/library/utils/html/str.html
lib/R/library/utils/html/summaryRprof.html
lib/R/library/utils/html/toLatex.html
-lib/R/library/utils/html/tracemem.html
+lib/R/library/utils/html/type.convert.html
lib/R/library/utils/html/update.packages.html
lib/R/library/utils/html/url.show.html
lib/R/library/utils/html/utils-defunct.html
lib/R/library/utils/html/utils-deprecated.html
lib/R/library/utils/html/utils-package.html
lib/R/library/utils/html/vignette.html
+lib/R/library/utils/html/withVisible.html
+lib/R/library/utils/html/write.table.html
+lib/R/library/utils/html/zip.file.extract.html
lib/R/library/utils/iconvlist
lib/R/library/utils/latex/BATCH.tex
lib/R/library/utils/latex/COMPILE.tex
@@ -8308,9 +8488,11 @@
lib/R/library/utils/latex/PkgUtils.tex
lib/R/library/utils/latex/REMOVE.tex
lib/R/library/utils/latex/RHOME.tex
+lib/R/library/utils/latex/RShowDoc.tex
lib/R/library/utils/latex/RSiteSearch.tex
lib/R/library/utils/latex/Rprof.tex
lib/R/library/utils/latex/Rprofmem.tex
+lib/R/library/utils/latex/Rscript.tex
lib/R/library/utils/latex/Rtangle.tex
lib/R/library/utils/latex/RweaveLatex.tex
lib/R/library/utils/latex/SHLIB.tex
@@ -8318,6 +8500,7 @@
lib/R/library/utils/latex/SweaveSyntConv.tex
lib/R/library/utils/latex/SweaveUtils.tex
lib/R/library/utils/latex/URLencode.tex
+lib/R/library/utils/latex/View.tex
lib/R/library/utils/latex/alarm.tex
lib/R/library/utils/latex/apropos.tex
lib/R/library/utils/latex/browseEnv.tex
@@ -8330,6 +8513,7 @@
lib/R/library/utils/latex/close.socket.tex
lib/R/library/utils/latex/combn.tex
lib/R/library/utils/latex/compareVersion.tex
+lib/R/library/utils/latex/count.fields.tex
lib/R/library/utils/latex/data.tex
lib/R/library/utils/latex/dataentry.tex
lib/R/library/utils/latex/debugger.tex
@@ -8339,8 +8523,10 @@
lib/R/library/utils/latex/edit.tex
lib/R/library/utils/latex/example.tex
lib/R/library/utils/latex/file.edit.tex
+lib/R/library/utils/latex/filetest.tex
lib/R/library/utils/latex/fix.tex
lib/R/library/utils/latex/flush.console.tex
+lib/R/library/utils/latex/format.tex
lib/R/library/utils/latex/getAnywhere.tex
lib/R/library/utils/latex/getFromNamespace.tex
lib/R/library/utils/latex/getS3method.tex
@@ -8375,26 +8561,34 @@
lib/R/library/utils/latex/read.fortran.tex
lib/R/library/utils/latex/read.fwf.tex
lib/R/library/utils/latex/read.socket.tex
+lib/R/library/utils/latex/read.table.tex
lib/R/library/utils/latex/readNEWS.tex
lib/R/library/utils/latex/recover.tex
+lib/R/library/utils/latex/relist.tex
lib/R/library/utils/latex/remove.packages.tex
+lib/R/library/utils/latex/roman.tex
lib/R/library/utils/latex/savehistory.tex
lib/R/library/utils/latex/select.list.tex
lib/R/library/utils/latex/sessionInfo.tex
lib/R/library/utils/latex/setRepositories.tex
+lib/R/library/utils/latex/stack.tex
lib/R/library/utils/latex/str.tex
lib/R/library/utils/latex/summaryRprof.tex
lib/R/library/utils/latex/toLatex.tex
-lib/R/library/utils/latex/tracemem.tex
+lib/R/library/utils/latex/type.convert.tex
lib/R/library/utils/latex/update.packages.tex
lib/R/library/utils/latex/url.show.tex
lib/R/library/utils/latex/utils-defunct.tex
lib/R/library/utils/latex/utils-deprecated.tex
lib/R/library/utils/latex/utils-package.tex
lib/R/library/utils/latex/vignette.tex
+lib/R/library/utils/latex/withVisible.tex
+lib/R/library/utils/latex/write.table.tex
+lib/R/library/utils/latex/zip.file.extract.tex
lib/R/library/utils/man/utils.Rd.gz
lib/R/library/utils/po/en at quot/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/fr/LC_MESSAGES/R-utils.mo
+lib/R/library/utils/po/ja/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
@@ -8409,11 +8603,14 @@
lib/R/share/encodings/Adobe-glyphlist
lib/R/share/encodings/character-sets
lib/R/share/java/getsp.class
-lib/R/share/licenses/Artistic
-lib/R/share/licenses/BSD
+lib/R/share/licenses/Artistic-1.0
+lib/R/share/licenses/Artistic-2.0
lib/R/share/licenses/GPL-2
+lib/R/share/licenses/GPL-3
lib/R/share/licenses/LGPL-2
lib/R/share/licenses/LGPL-2.1
+lib/R/share/licenses/LGPL-3
+lib/R/share/licenses/license.db
lib/R/share/locale/de/LC_MESSAGES/R.mo
lib/R/share/locale/en/LC_MESSAGES/R.mo
lib/R/share/locale/en at quot/LC_MESSAGES/R.mo
@@ -8432,6 +8629,7 @@
lib/R/share/make/shlib.mk
lib/R/share/make/tests.mk
lib/R/share/make/vars.mk
+lib/R/share/perl/File/Copy/Recursive.pm
lib/R/share/perl/R/Dcf.pm
lib/R/share/perl/R/Logfile.pm
lib/R/share/perl/R/Rd.pm
@@ -8458,6 +8656,7 @@
lib/R/share/texmf/upquote.sty
lib/libR.so
lib/libR.so.0
+libdata/pkgconfig/libR.pc
%%DOCSDIR%%/AUTHORS
%%DOCSDIR%%/COPYING
%%DOCSDIR%%/COPYING.LIB
@@ -8531,6 +8730,8 @@
@dirrm lib/R/share/sh
@dirrm lib/R/share/perl/Text
@dirrm lib/R/share/perl/R
+ at dirrm lib/R/share/perl/File/Copy
+ at dirrm lib/R/share/perl/File
@dirrm lib/R/share/perl
@dirrm lib/R/share/make
@dirrm lib/R/share/locale/zh_TW/LC_MESSAGES
@@ -8572,6 +8773,8 @@
@dirrm lib/R/library/utils/po/ru
@dirrm lib/R/library/utils/po/ko/LC_MESSAGES
@dirrm lib/R/library/utils/po/ko
+ at dirrm lib/R/library/utils/po/ja/LC_MESSAGES
+ at dirrm lib/R/library/utils/po/ja
@dirrm lib/R/library/utils/po/fr/LC_MESSAGES
@dirrm lib/R/library/utils/po/fr
@dirrm lib/R/library/utils/po/en at quot/LC_MESSAGES
@@ -8586,6 +8789,8 @@
@dirrm lib/R/library/utils/R
@dirrm lib/R/library/utils/Meta
@dirrm lib/R/library/utils
+ at dirrm lib/R/library/tools/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/tools/po/zh_CN
@dirrm lib/R/library/tools/po/ru/LC_MESSAGES
@dirrm lib/R/library/tools/po/ru
@dirrm lib/R/library/tools/po/pt_BR/LC_MESSAGES
@@ -8610,6 +8815,8 @@
@dirrm lib/R/library/tools/R
@dirrm lib/R/library/tools/Meta
@dirrm lib/R/library/tools
+ at dirrm lib/R/library/tcltk/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/tcltk/po/zh_CN
@dirrm lib/R/library/tcltk/po/ru/LC_MESSAGES
@dirrm lib/R/library/tcltk/po/ru
@dirrm lib/R/library/tcltk/po/pt_BR/LC_MESSAGES
@@ -8646,6 +8853,8 @@
@dirrm lib/R/library/survival/R
@dirrm lib/R/library/survival/Meta
@dirrm lib/R/library/survival
+ at dirrm lib/R/library/stats4/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/stats4/po/zh_CN
@dirrm lib/R/library/stats4/po/ru/LC_MESSAGES
@dirrm lib/R/library/stats4/po/ru
@dirrm lib/R/library/stats4/po/pt_BR/LC_MESSAGES
@@ -8696,6 +8905,8 @@
@dirrm lib/R/library/stats/R
@dirrm lib/R/library/stats/Meta
@dirrm lib/R/library/stats
+ at dirrm lib/R/library/splines/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/splines/po/zh_CN
@dirrm lib/R/library/splines/po/ru/LC_MESSAGES
@dirrm lib/R/library/splines/po/ru
@dirrm lib/R/library/splines/po/pt_BR/LC_MESSAGES
@@ -8748,6 +8959,15 @@
@dirrm lib/R/library/rpart/R
@dirrm lib/R/library/rpart/Meta
@dirrm lib/R/library/rpart
+ at dirrm lib/R/library/rcompgen/man
+ at dirrm lib/R/library/rcompgen/latex
+ at dirrm lib/R/library/rcompgen/html
+ at dirrm lib/R/library/rcompgen/help
+ at dirrm lib/R/library/rcompgen/examples
+ at dirrm lib/R/library/rcompgen/R-ex
+ at dirrm lib/R/library/rcompgen/R
+ at dirrm lib/R/library/rcompgen/Meta
+ at dirrm lib/R/library/rcompgen
@dirrm lib/R/library/nnet/po/fr/LC_MESSAGES
@dirrm lib/R/library/nnet/po/fr
@dirrm lib/R/library/nnet/po/en at quot/LC_MESSAGES
@@ -8790,10 +9010,14 @@
@dirrm lib/R/library/mgcv
@dirrm lib/R/library/methods/po/zh_CN/LC_MESSAGES
@dirrm lib/R/library/methods/po/zh_CN
+ at dirrm lib/R/library/methods/po/ru/LC_MESSAGES
+ at dirrm lib/R/library/methods/po/ru
@dirrm lib/R/library/methods/po/pt_BR/LC_MESSAGES
@dirrm lib/R/library/methods/po/pt_BR
@dirrm lib/R/library/methods/po/ko/LC_MESSAGES
@dirrm lib/R/library/methods/po/ko
+ at dirrm lib/R/library/methods/po/ja/LC_MESSAGES
+ at dirrm lib/R/library/methods/po/ja
@dirrm lib/R/library/methods/po/fr/LC_MESSAGES
@dirrm lib/R/library/methods/po/fr
@dirrm lib/R/library/methods/po/en at quot/LC_MESSAGES
@@ -8819,6 +9043,8 @@
@dirrm lib/R/library/lattice/R
@dirrm lib/R/library/lattice/Meta
@dirrm lib/R/library/lattice
+ at dirrm lib/R/library/grid/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/grid/po/zh_CN
@dirrm lib/R/library/grid/po/ru/LC_MESSAGES
@dirrm lib/R/library/grid/po/ru
@dirrm lib/R/library/grid/po/pt_BR/LC_MESSAGES
@@ -8833,6 +9059,8 @@
@dirrm lib/R/library/grid/po/fr
@dirrm lib/R/library/grid/po/en at quot/LC_MESSAGES
@dirrm lib/R/library/grid/po/en at quot
+ at dirrm lib/R/library/grid/po/de/LC_MESSAGES
+ at dirrm lib/R/library/grid/po/de
@dirrm lib/R/library/grid/po
@dirrm lib/R/library/grid/man
@dirrm lib/R/library/grid/libs
@@ -8844,6 +9072,8 @@
@dirrm lib/R/library/grid/R
@dirrm lib/R/library/grid/Meta
@dirrm lib/R/library/grid
+ at dirrm lib/R/library/graphics/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/graphics/po/zh_CN
@dirrm lib/R/library/graphics/po/ru/LC_MESSAGES
@dirrm lib/R/library/graphics/po/ru
@dirrm lib/R/library/graphics/po/ko/LC_MESSAGES
@@ -8856,6 +9086,8 @@
@dirrm lib/R/library/graphics/po/fr
@dirrm lib/R/library/graphics/po/en at quot/LC_MESSAGES
@dirrm lib/R/library/graphics/po/en at quot
+ at dirrm lib/R/library/graphics/po/de/LC_MESSAGES
+ at dirrm lib/R/library/graphics/po/de
@dirrm lib/R/library/graphics/po
@dirrm lib/R/library/graphics/man
@dirrm lib/R/library/graphics/latex
@@ -8866,6 +9098,8 @@
@dirrm lib/R/library/graphics/R
@dirrm lib/R/library/graphics/Meta
@dirrm lib/R/library/graphics
+ at dirrm lib/R/library/grDevices/po/zh_CN/LC_MESSAGES
+ at dirrm lib/R/library/grDevices/po/zh_CN
@dirrm lib/R/library/grDevices/po/ru/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/ru
@dirrm lib/R/library/grDevices/po/ko/LC_MESSAGES
@@ -8874,14 +9108,14 @@
@dirrm lib/R/library/grDevices/po/ja
@dirrm lib/R/library/grDevices/po/it/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/it
- at dirrm lib/R/library/grDevices/po/grDevices-zh_CN/LC_MESSAGES
- at dirrm lib/R/library/grDevices/po/grDevices-zh_CN
@dirrm lib/R/library/grDevices/po/fr/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/fr
@dirrm lib/R/library/grDevices/po/en_GB/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/en_GB
@dirrm lib/R/library/grDevices/po/en at quot/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/en at quot
+ at dirrm lib/R/library/grDevices/po/de/LC_MESSAGES
+ at dirrm lib/R/library/grDevices/po/de
@dirrm lib/R/library/grDevices/po
@dirrm lib/R/library/grDevices/man
@dirrm lib/R/library/grDevices/libs
@@ -8918,6 +9152,14 @@
@dirrm lib/R/library/datasets/R
@dirrm lib/R/library/datasets/Meta
@dirrm lib/R/library/datasets
+ at dirrm lib/R/library/codetools/man
+ at dirrm lib/R/library/codetools/latex
+ at dirrm lib/R/library/codetools/html
+ at dirrm lib/R/library/codetools/help
+ at dirrm lib/R/library/codetools/R-ex
+ at dirrm lib/R/library/codetools/R
+ at dirrm lib/R/library/codetools/Meta
+ at dirrm lib/R/library/codetools
@dirrm lib/R/library/cluster/man
@dirrm lib/R/library/cluster/libs
@dirrm lib/R/library/cluster/latex
@@ -8942,6 +9184,8 @@
@dirrm lib/R/library/class/R
@dirrm lib/R/library/class/Meta
@dirrm lib/R/library/class
+ at dirrm lib/R/library/boot/po/ru/LC_MESSAGES
+ at dirrm lib/R/library/boot/po/ru
@dirrm lib/R/library/boot/po/fr/LC_MESSAGES
@dirrm lib/R/library/boot/po/fr
@dirrm lib/R/library/boot/po/en at quot/LC_MESSAGES
@@ -9017,3 +9261,4 @@
@dirrm lib/R/bin/exec
@dirrm lib/R/bin
@dirrm lib/R
+ at dirrmtry libdata/pkgconfig
Index: Makefile
===================================================================
RCS file: /home/cvs/mports/math/R/Makefile,v
retrieving revision 1.2
retrieving revision 1.3
diff -L math/R/Makefile -L math/R/Makefile -u -r1.2 -r1.3
--- math/R/Makefile
+++ math/R/Makefile
@@ -4,11 +4,11 @@
# Whom: Maurice Castro <maurice at serc.rmit.edu.au>
#
# $MidnightBSD$
-# $FreeBSD: ports/math/R/Makefile,v 1.57 2007/01/25 17:56:40 rafan Exp $
+# $FreeBSD: ports/math/R/Makefile,v 1.68 2008/03/23 16:44:04 miwi Exp $
#
PORTNAME= R
-PORTVERSION= 2.4.1
+PORTVERSION= 2.6.1
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -44,7 +44,7 @@
INFO_MANUALS "Install GNU info manuals" on \
LETTER_PAPER "Use US Letter paper" off
-MAN1= R.1
+MAN1= R.1 Rscript.1
USE_LDCONFIG= yes
INSTALL_TARGET= install install-libR
@@ -61,10 +61,7 @@
.include <bsd.port.pre.mk>
-WANT_FORTRAN= yes
-BUILD_DEPENDS+= gfortran42:${PORTSDIR}/lang/gcc42
-FC= gfortran42
-F77= gfortran42
+USE_FORTRAN= yes
test check: build
@(cd ${WRKSRC}; ${MAKE} check)
@@ -73,9 +70,15 @@
.if defined(WITH_ATLAS)
LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
-CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas" --with-blas="-lf77blas"
+CONFIGURE_ARGS+=--with-blas="-lf77blas -latlas"
+# A workaround to prevent hangs up during the build.
+.if ${ARCH} != "i386"
+CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas"
PLIST_SUB+= BLAS="@comment "
.else
+PLIST_SUB+= BLAS=""
+.endif
+.else
LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas
CONFIGURE_ARGS+=--with-blas="-lblas"
PLIST_SUB+= BLAS=""
@@ -110,7 +113,7 @@
PLIST_SUB+= X11="@comment "
.else
CONFIGURE_ARGS+=--with-x
-USE_XLIB= yes
+USE_XORG= x11
PLIST_SUB+= X11=""
.endif
@@ -152,6 +155,11 @@
CONFIGURE_ENV+= R_PAPERSIZE=letter
.endif
+post-patch:
+ @${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g' \
+ ${WRKSRC}/src/nmath/standalone/Makefile.in \
+ ${WRKSRC}/src/unix/Makefile.in
+
post-install:
${MV} ${PREFIX}/lib/libR.so ${PREFIX}/lib/libR.so.0
${LN} -sf ${PREFIX}/lib/libR.so.0 ${PREFIX}/lib/libR.so
Index: distinfo
===================================================================
RCS file: /home/cvs/mports/math/R/distinfo,v
retrieving revision 1.1
retrieving revision 1.2
diff -L math/R/distinfo -L math/R/distinfo -u -r1.1 -r1.2
--- math/R/distinfo
+++ math/R/distinfo
@@ -1,3 +1,3 @@
-MD5 (R-2.4.1.tar.gz) = 92b33fd2c3e770d595c1a472889230d5
-SHA256 (R-2.4.1.tar.gz) = 4ff92cfd29064db59978ef11c95dd88a4040ed4984fdce29fcb5d5783fe9028b
-SIZE (R-2.4.1.tar.gz) = 14570344
+MD5 (R-2.6.1.tar.gz) = 19c35a69e1afa73f5f70f91ff9939233
+SHA256 (R-2.6.1.tar.gz) = 8fe505cbd9562cc84422475bc5c0b8e1b88b14d0c9e11d0de4f9e83ae8ce2563
+SIZE (R-2.6.1.tar.gz) = 15519691
More information about the Midnightbsd-cvs
mailing list